Identification of a major qtl rna-seq

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Web16 okt. 2024 · Identification of two QTLs, BPH41 and BPH42, and their respective gene candidates for brown planthopper resistance in rice by a combinatorial approach of QTL mapping and RNA-seq October 2024 DOI ... Web27 mei 2024 · Plant height is one of the most important agronomical traits in rice (Oryza sativa L.). Introducing the semidwarf rice in the 1960s significantly enhanced the rice yield potential in Asia. Implementing near-isogenic lines (NILs) is the most powerful tool for the identification and fine mapping of quantitative trait loci (QTLs). In this study, 176 NILs …

Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq) PLOS …

Web1 feb. 2024 · Conclusions This study mapped a major QTL influencing four fiber quality traits to a 0.28-cM interval and identified three candidate genes by RNA-Seq and RT-PCR analysis. Web9 jan. 2024 · After integrating the QTL mapping and RNA sequencing data, 33 genes, including a gene encoding auxin-responsive GH3 family protein and a gene encoding sphere organelles protein-related gene, were selected as candidates that may control leaf shape. portland retro gaming expo joust pinball

Identification of a Major QTL and Candidate Gene …

WebThis study demonstrates how identification of genes underpinning disease-resistance QTL based on differential expression and SNPs can be improved by performing … Web19 feb. 2024 · Ten QTLs for seed Fe and Zn content identified in the GB RIL population are shown on the right side of the corresponding linkage group. Red, purple, green, and orange represent the 18GZ, 18ZC, 19GZ, and 19ZC environments, respectively. Cyan represents the QTLs using QEI mapping analysis Full size image WebDNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA.It includes any method or technology that is used to determine the order of the four bases: adenine, guanine, … portland ridesharing accident attorney

Bulked Segregant RNA-seq Reveals Differential Expression and …

Identification of a new QTL underlying seminal root number in a …

Web13 nov. 2024 · Detection of a major QTL controlling capsaicinoid accumulation in the pericarp. Our QTL analysis revealed a total of 16 QTLs associated with capsaicinoid … Web10 aug. 2024 · Recently, a method of combining QTL-seq and RNA-seq was developed, and it can identify chromosome fragments or genes that can be verified by each other. Lately, a major QTL on chromosome 6 for capsaicinoid content was identified using QTL-seq and high-density genetic maps, and candidate genes were revealed by combining … optimum physicians healthcareWebFine mapping narrowed down BnaC08cqDTF to an 86-kb region on chromosome C08. The region harbored fifteen genes. After comparative analyses of the DNA sequences for mutation between A and C syntenic regions and detected by RNA-seq and qRT-PCR between the two parents, we found that BnaC08G0010400ZS harbors an A/G … optimum physio chilliwack

"DNA sequencing may be used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes, or entire genomes of any organism. DNA sequencing is also the most efficient way to indirectly sequence RNA or proteins (via their open reading frames). In fact, DNA sequencing has become a key technology in many areas of biology and other sciences such as medicine, forensics, and anthropology. " - Identification of a major qtl rna-seq

Identification of a major qtl rna-seq

Identification of a Major QTL and Candidate Gene Analysis of …

Web7 feb. 2024 · Kernel row number is an important component of grain yield in maize. With development of classical quantitative trait loci (QTL) mapping and modern RNA-seq, numerous QTL and tissue-specific gene expression data were accumulated in previous studies. In this paper, a total of initial 373 QTL for grain yield (GY) and kernel row … Web28 mei 2024 · Gene annotations, gene ontology (GO) enrichment and RNA-seq analyses of the genomic regions of those 7 QTL clusters identified 47 ... adaptation, speciation, and reproductive isolation (Ma et al., 2015), previous studies focused mostly on identifying main-effect QTLs associated with seed sizes, shapes, and 100-seed weight in ...

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Web22 jun. 2024 · In this study, three major QTLs on chromosomes A05, B02, and B06 were determined by applying the QTL-seq approach in a recombinant inbred line (RIL) population and it was found that the DEGs were widely distributed in the ubiquitin–proteasome pathway, the serine/threonine-protein pathway, signal transduction of hormones and … Webing QTL-seq and RNA-seq was developed, and it can identify chromosome fragments or genes that can be verified by each other. Lately, a major QTL on chromo-some 6 for …

Web9 mrt. 2024 · Combining QTL-seq, QTL-mapping and RNA-seq identified a major QTL and candidate genes, which contributed to the development of KASP markers and … Web5 feb. 2024 · A novel quantitative trait locus (QTL) named qCmPMR-12 for resistance to PM on chromosome 12 was identified, which ranged from 22.0 Mb to 22.9 Mb. RNA-Seq analysis indicated that the...

Web23 nov. 2024 · RNA-seq provides useful data to both map loci underpinning important crop traits and dissect the role these genes play within expression of these traits as well as identify novel QTL. Bulk segregant RNA-seq approaches have identified QTL underpinning important agronomic traits such as kernel row number in maize (Liu et al. 2016a, b), pod … WebSimulation study showed that QTL-seq is able to detect QTLs over wide ranges of experimental variables, and the method can be generally applied in population genomics …

WebThe first QTL mapped by QTL-seq overlapped with the major QTL detected by the QTL linkage analysis in the 1.0 to 1.9 Mb region of chromosome 3. Six of the QTLs from …

WebWaterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss Bulked segregant RNA-seq (BSR-seq) has been widely applied to profile candidate genes and map associated Single Nucleotide Polymorphism (SNP) markers in many species In this study, ten … portland rhinoWeb11 sep. 2024 · This study demonstrated that the combination of conventional QTL mapping, QTL-seq analysis and RNA-seq can rapidly identify candidate genes within major … portland rhino slamWeb16 apr. 2024 · Combined QTL mapping and RNA-Seq profiling reveals candidate genes associated with cadmium tolerance in barley.pdf Available via license: CC BY Content may be subject to copyright. portland retro gaming expo 2015 army manWeb5 feb. 2024 · QTL detection was performed using package “qtl” (vs. 1.44–9) in two steps, the first scan determining co-factors and the second scan identifying robust QTL, taking … optimum physicians healthcare pearlandWeb13 nov. 2024 · A whole-genome sequencing-based QTL-seq strategy was employed, identifying a major QTL on chromosome 6. To validate the QTL on chromosome 6, we performed traditional QTL mapping using the same population in QTL-seq with an additional biparental population. optimum physicians pearlandWebWaterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss Bulked segregant … optimum physio therapiesWeb30 mei 2024 · Request PDF Integrating GWAS, QTL, mapping and RNA-seq to identify candidate genes for seed vigor in rice (Oryza sativa L.) Seed vigor is an important seed quality trait in rice (Oryza sativa ... optimum physiotherapy banchory